Query the API
Hit https://api-omicidx.cancerdatasci.org with curl, Python, or R. The
API reference is auto-generated from the live OpenAPI
spec.
OmicIDX
A unified, queryable index of biological metadata across NCBI, EBI, and PubMed — built for researchers.
What you can do here
Section titled “What you can do here”Understand the data
Overview of what OmicIDX indexes and where it pulls from.
See the architecture
How raw NCBI/EBI feeds become a queryable index — Dagster → DuckDB → PostgreSQL → REST.
Contribute
The contributor guide covers the ETL internals and the automation cadence pattern that drives the daily refresh.
Status
Section titled “Status”These docs are early — the framework is in place, content is being written. Sections marked 🚧 are stubs. Track progress in the GitHub issues.