Guides

import Wip from ”../../../components/Wip.astro”;

What’s planned

• Querying with curl — minimal walkthrough of the API envelope, pagination, and a real query.
• Querying with Python — short example using httpx against the live API; later, the official Python client.
• Querying with R — same in R, including the eventual R client.
• Reproducing a study — end-to-end: from a published GEO accession to the underlying SRA experiments and BioSamples.
• Working with the DuckDB snapshot — downloading omicidx.duckdb and querying offline.

These will be Quarto-rendered where it makes sense, so the code shown is the code that ran, with real outputs.

In the meantime, the API reference is the most useful starting point.